PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25332-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 149aa    MW: 16730.8 Da    PI: 10.4172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25332-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.9e-13243955
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     E +RRdriN+++++L++l+P++      K +Ka++L ++++++k+Lq
  TRIUR3_25332-P1  2 EVKRRDRINQKMQTLQKLVPNS-----SKTDKASMLDEVIDHLKQLQ 43
                     779******************8.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003533.3E-11148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.36E-13147No hitNo description
PROSITE profilePS5088815.288142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-14255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MEVKRRDRIN QKMQTLQKLV PNSSKTDKAS MLDEVIDHLK QLQATVQMMN RMSSMMMPMA  60
MPQLAQMSVM ANMAQMAQMA QMGLGMINMA GPLAQPAYPG LTQPMMHTST PFQQQQQQAQ  120
PNGMEAYSRM MAMCQKLGQQ QTKPGSSKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614201e-136AK361420.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E09.
GenBankAK3678141e-136AK367814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697075.15e-36PREDICTED: transcription factor UNE10-like
TrEMBLM7ZFF91e-102M7ZFF9_TRIUA; Transcription factor UNE10
STRINGOB10G25310.17e-36(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-19bHLH family protein